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1

Cytokine-mediated communication: a quantitative appraisal of immune complexity

Altan-Bonnet, Grégoire, Mukherjee, Ratnadeep

Journal:

Nature Reviews Immunology

Year:

2019

Language:

english

File:

PDF, 1.45 MB

english, 2019

2

Hierarchical Modeling for Rare Event Detection and Cell Subset Alignment across Flow Cytometry Samples

Cron, Andrew, Gouttefangeas, Cécile, Frelinger, Jacob, Lin, Lin, Singh, Satwinder K., Britten, Cedrik M., Welters, Marij J. P., van der Burg, Sjoerd H., West, Mike, Chan, Cliburn, Altan-Bonnet, Grégoi

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 2.80 MB

english, 2013

3

Extracellular vesicles are the Trojan horses of viral infection

Altan-Bonnet, Nihal

Journal:

Current Opinion in Microbiology

Year:

2016

Language:

english

File:

PDF, 575 KB

english, 2016

4

Chemokines enhance immunity by guiding naive CD8+ T cells to sites of CD4+ T cell–dendritic cell interaction

Castellino, Flora, Huang, Alex Y., Altan-Bonnet, Grégoire, Stoll, Sabine, Scheinecker, Clemens, Germain, Ronald N.

Journal:

Year:

2006

Language:

english

File:

PDF, 520 KB

english, 2006

5

A cascade of protein kinase C isozymes promotes cytoskeletal polarization in T cells

Quann, Emily J, Liu, Xin, Altan-Bonnet, Grégoire, Huse, Morgan

Journal:

Nature Immunology

Year:

2011

Language:

english

File:

PDF, 1.73 MB

english, 2011

6

Molecular basis for Golgi maintenance and biogenesis

Nihal Altan-Bonnet, Rachid Sougrat, Jennifer Lippincott-Schwartz

Journal:

Current Opinion in Cell Biology

Year:

2004

Language:

english

File:

PDF, 263 KB

english, 2004

7

Phosphatidylinositol 4-kinases: hostages harnessed to build panviral replication platforms

Nihal Altan-Bonnet, Tamas Balla

Journal:

Trends in Biochemical Sciences

Year:

2012

Language:

english

File:

PDF, 1.30 MB

english, 2012

8

A role for Arf1 in mitotic Golgi disassembly, chromosome segregation, and cytokinesis

Altan-Bonnet, N.

Journal:

Proceedings of the National Academy of Sciences

Year:

2003

Language:

english

File:

PDF, 498 KB

english, 2003

9

Quantitative challenges in understanding ligand discrimination by αβ T cells

Ofer Feinerman, Ronald N. Germain, Grégoire Altan-Bonnet

Journal:

Molecular Immunology

Year:

2008

Language:

english

File:

PDF, 1020 KB

english, 2008

10

Phenotypic model for early T-cell activation displaying sensitivity, specificity, and antagonism

Francois, P., Voisinne, G., Siggia, E. D., Altan-Bonnet, G., Vergassola, M.

Journal:

Proceedings of the National Academy of Sciences

Year:

2013

Language:

english

File:

PDF, 1.41 MB

english, 2013

11

Bubble Dynamics in Double-Stranded DNA

Altan-Bonnet, Grégoire, Libchaber, Albert, Krichevsky, Oleg

Journal:

Physical Review Letters

Year:

2003

Language:

english

File:

PDF, 151 KB

english, 2003

12

Diversity training for signal transduction: leveraging cell-to-cell variability to dissect cellular signaling, differentiation and death

Cotari, Jesse W, Voisinne, Guillaume, Altan-Bonnet, Grégoire

Journal:

Current Opinion in Biotechnology

Year:

2013

Language:

english

File:

PDF, 990 KB

english, 2013

13

T cell responses to antigen: hasty proposals resolved through long engagements

Tkach, Karen, Altan-Bonnet, Grégoire

Journal:

Current Opinion in Immunology

Year:

2013

Language:

english

File:

PDF, 349 KB

english, 2013

14

Monitoring bound HA1(H1N1) and HA1(H5N1) on freely suspended graphene over plasmonic platforms with infrared spectroscopy

Banerjee, Amrita, Chakraborty, Sumit, Altan-Bonnet, Nihal, Grebel, Haim

Journal:

Chemical Physics Letters

Year:

2013

Language:

english

File:

PDF, 1.97 MB

english, 2013

15

Comprehensive Biophysics || 9.16 Systems Immunology: A Primer for Biophysicists

Altan-Bonnet, G.

Year:

2012

Language:

english

File:

PDF, 535 KB

english, 2012

16

Nucleic acid hybridization: Robust sequence discrimination

Altan-Bonnet, Grégoire, Kramer, Fred Russell

Journal:

Nature Chemistry

Year:

2012

Language:

english

File:

PDF, 194 KB

english, 2012

17

Distinct influences of peptide-MHC quality and quantity on in vivo T-cell responses

Gottschalk, R. A., Hathorn, M. M., Beuneu, H., Corse, E., Dustin, M. L., Altan-Bonnet, G., Allison, J. P.

Journal:

Proceedings of the National Academy of Sciences

Year:

2012

Language:

english

File:

PDF, 880 KB

english, 2012

18

Annular PIP3 accumulation controls actin architecture and modulates cytotoxicity at the immunological synapse

Le Floc'h, A., Tanaka, Y., Bantilan, N. S., Voisinne, G., Altan-Bonnet, G., Fukui, Y., Huse, M.

Journal:

Journal of Experimental Medicine

Year:

2013

Language:

english

File:

PDF, 3.87 MB

english, 2013

19

On the Role of Protein 3CD in Formation of the Poliovirus Replication Organelle

Arnold, Jamie J., Oh, Hyung-Suk, Banerjee, Sravani, Lodeiro, Maria F., Han, Qingxia, Shengjuler, Djoshkun, Uchida, Akira, Moustafa, Ibrahim M., Moran, Joseph, Hsu, Nai-Yun, Mei Chan, Yan, Altan-Bonnet

Journal:

Biophysical Journal

Year:

2013

Language:

english

File:

PDF, 43 KB

english, 2013

20

Inhibition of c-Rel Activity Prevents Graft-Versus-Host Disease without Compromising Tumor Immunity

Shono, Yusuke, Tuckett, Andrea Z., Liou, Hsiou-Chi, Altan-Bonnet, Gregoire, Tsai, Jennifer J., Smith, Odette M., West, Mallory L., Singer, Natalie V., van den Brink, Marcel R.M., Zakrzewski, Johannes

Journal:

Biology of Blood and Marrow Transplantation

Year:

2013

Language:

english

File:

PDF, 86 KB

english, 2013

21

Variability and Robustness in T Cell Activation from Regulated Heterogeneity in Protein Levels

Feinerman, O., Veiga, J., Dorfman, J. R., Germain, R. N., Altan-Bonnet, G.

Journal:

Year:

2008

Language:

english

File:

PDF, 540 KB

english, 2008

22

Discerning aggregation in homogeneous ensembles: A general description of photon counting spectroscopy in diffusing systems

Ren, Hai-Cang, Goddard, Noel L., Altan-Bonnet, Grégoire, Libchaber, Albert

Journal:

Physical Review E

Year:

2004

Language:

english

File:

PDF, 179 KB

english, 2004

23

Computational Algorithm-Driven Evaluation of Monocytic Myeloid-Derived Suppressor Cell Frequency for Prediction of Clinical Outcomes

Kitano, S., Postow, M. A., Ziegler, C. G. K., Kuk, D., Panageas, K. S., Cortez, C., Rasalan, T., Adamow, M., Yuan, J., Wong, P., Altan-Bonnet, G., Wolchok, J. D., Lesokhin, A. M.

Journal:

Cancer Immunology Research

Year:

2014

Language:

english

File:

PDF, 701 KB

english, 2014

24

Perspectives for Computer Modeling in the Study of T Cell Activation

Coward, J., Germain, R. N., Altan-Bonnet, G.

Journal:

Cold Spring Harbor Perspectives in Biology

Year:

2010

Language:

english

File:

PDF, 1008 KB

english, 2010

25

Cell-pathogen interactions (viruses and bacteria)

Altan-Bonnet, N., Steele-Mortimer, O.

Journal:

Molecular Biology of the Cell

Year:

2012

Language:

english

File:

PDF, 105 KB

english, 2012

26

Golgi Inheritance in Mammalian Cells Is Mediated through Endoplasmic Reticulum Export Activities

Altan-Bonnet, N.

Journal:

Molecular Biology of the Cell

Year:

2005

Language:

english

File:

PDF, 785 KB

english, 2005

27

A Small-Molecule c-Rel Inhibitor Reduces Alloactivation of T Cells without Compromising Antitumor Activity

Shono, Y., Tuckett, A. Z., Ouk, S., Liou, H.-C., Altan-Bonnet, G., Tsai, J. J., Oyler, J. E., Smith, O. M., West, M. L., Singer, N. V., Doubrovina, E., Pankov, D., Undhad, C. V., Murphy, G. F., Lezcan

Journal:

Cancer Discovery

Year:

2014

Language:

english

File:

PDF, 8.32 MB

english, 2014

28

Nuclear Factor 45 (NF45) Is a Regulatory Subunit of Complexes with NF90/110 Involved in Mitotic Control

Guan, D., Altan-Bonnet, N., Parrott, A. M., Arrigo, C. J., Li, Q., Khaleduzzaman, M., Li, H., Lee, C.-G., Pe'ery, T., Mathews, M. B.

Journal:

Molecular and Cellular Biology

Year:

2008

Language:

english

File:

PDF, 1.54 MB

english, 2008

29

Cell-to-Cell Variability Analysis Dissects the Plasticity of Signaling of Common Chain Cytokines in T Cells

Cotari, J. W., Voisinne, G., Dar, O. E., Karabacak, V., Altan-Bonnet, G.

Journal:

Science Signaling

Year:

2013

Language:

english

File:

PDF, 304 KB

english, 2013

30

Cracking the NF- B Code

Tkach, K. E., Oyler, J. E., Altan-Bonnet, G.

Journal:

Science Signaling

Year:

2014

Language:

english

File:

PDF, 788 KB

english, 2014

31

Hijacking Components of the Cellular Secretory Pathway for Replication of Poliovirus RNA

Belov, G. A., Altan-Bonnet, N., Kovtunovych, G., Jackson, C. L., Lippincott-Schwartz, J., Ehrenfeld, E.

Journal:

Journal of Virology

Year:

2007

Language:

english

File:

PDF, 665 KB

english, 2007

32

Self-antigen-specific CD8+ T cell precursor frequency determines the quality of the antitumor immune response

Rizzuto, G. A., Merghoub, T., Hirschhorn-Cymerman, D., Liu, C., Lesokhin, A. M., Sahawneh, D., Zhong, H., Panageas, K. S., Perales, M.-A., Altan-Bonnet, G., Wolchok, J. D., Houghton, A. N.

Journal:

Journal of Experimental Medicine

Year:

2009

Language:

english

File:

PDF, 7.50 MB

english, 2009

33

Mechanistic Model of Natural Killer Cell Proliferative Response to IL-15 Receptor Stimulation

Zhao, Yun M., French, Anthony R., Altan-Bonnet, Grégoire

Journal:

PLoS Computational Biology

Year:

2013

Language:

english

File:

PDF, 1.83 MB

english, 2013

34

Quantifying the Length and Variance of the Eukaryotic Cell Cycle Phases by a Stochastic Model and Dual Nucleoside Pulse Labelling

Weber, Tom Serge, Jaehnert, Irene, Schichor, Christian, Or-Guil, Michal, Carneiro, Jorge, Altan-Bonnet, Grégoire

Journal:

PLoS Computational Biology

Year:

2014

Language:

english

File:

PDF, 1.23 MB

english, 2014

35

Competition for IL-2 between Regulatory and Effector T Cells to Chisel Immune Responses

Höfer, Thomas, Krichevsky, Oleg, Altan-Bonnet, Grégoire

Journal:

Frontiers in Immunology

Year:

2012

Language:

english

File:

PDF, 745 KB

english, 2012

36

Modeling T Cell Antigen Discrimination Based on Feedback Control of Digital ERK Responses

Altan-Bonnet, Grégoire, Germain, Ronald N.

Journal:

Year:

2005

Language:

english

File:

PDF, 501 KB

english, 2005

37

Influenza A Virus Assembly Intermediates Fuse in the Cytoplasm

Lakdawala, Seema S., Wu, Yicong, Wawrzusin, Peter, Kabat, Juraj, Broadbent, Andrew J., Lamirande, Elaine W., Fodor, Ervin, Altan-Bonnet, Nihal, Shroff, Hari, Subbarao, Kanta, Heise, Mark T.

Journal:

Year:

2014

Language:

english

File:

PDF, 7.71 MB

english, 2014

38

An Interaction between Glutathione and the Capsid Is Required for the Morphogenesis of C-Cluster Enteroviruses

Ma, Hsin-Chieh, Liu, Ying, Wang, Chunling, Strauss, Michael, Rehage, Nina, Chen, Ying-Han, Altan-Bonnet, Nihal, Hogle, James, Wimmer, Eckard, Mueller, Steffen, Paul, Aniko V., Jiang, Ping, Kuhn, Richa

Journal:

Year:

2014

Language:

english

File:

PDF, 3.53 MB

english, 2014

39

EHD3 regulates early-endosome-to-Golgi transport and preserves Golgi morphology

Naslavsky, N., McKenzie, J., Altan-Bonnet, N., Sheff, D., Caplan, S.

Journal:

Journal of Cell Science

Year:

2009

Language:

english

File:

PDF, 2.98 MB

english, 2009

40

Clonal Abundance of Tumor-Specific CD4+ T Cells Potentiates Efficacy and Alters Susceptibility to Exhaustion

Malandro, Nicole, Budhu, Sadna, Kuhn, Nicholas F., Liu, Cailian, Murphy, Judith T., Cortez, Czrina, Zhong, Hong, Yang, Xia, Rizzuto, Gabrielle, Altan-Bonnet, Grégoire, Merghoub, Taha, Wolchok, Jedd D.

Journal:

Year:

2016

Language:

english

File:

PDF, 2.46 MB

english, 2016

41

T Cells Integrate Local and Global Cues to Discriminate between Structurally Similar Antigens

Voisinne, Guillaume, Nixon, Briana G., Melbinger, Anna, Gasteiger, Georg, Vergassola, Massimo, Altan-Bonnet, Grégoire

Journal:

Year:

2015

Language:

english

File:

PDF, 3.29 MB

english, 2015

42

The Case for Absolute Ligand Discrimination: Modeling Information Processing and Decision by Immune T Cells

François, Paul, Altan-Bonnet, Grégoire

Journal:

Journal of Statistical Physics

Year:

2016

Language:

english

File:

PDF, 1.65 MB

english, 2016

43

Clonal B cells in Waldenström’s macroglobulinemia exhibit functional features of chronic active B-cell receptor signaling

Argyropoulos, K V, Vogel, R, Ziegler, C, Altan-Bonnet, G, Velardi, E, Calafiore, M, Dogan, A, Arcila, M, Patel, M, Knapp, K, Mallek, C, Hunter, Z R, Treon, S P, van den Brink, M R M, Palomba, M L

Journal:

Year:

2016

Language:

english

File:

PDF, 1.53 MB

english, 2016

44

A Novel Fluorescent Labeling Method Enables Monitoring of Spatio-Temporal Dynamics of Developing Microsporidia

Santiana, Marianita, Takvorian, Peter M., Altan-Bonnet, Nihal, Cali, Ann

Journal:

Journal of Eukaryotic Microbiology

Year:

2016

Language:

english

File:

PDF, 1.41 MB

english, 2016

45

Intercellular transmission of viral populations with vesicles.

Altan-Bonnet, Nihal, Chen, Ying-Han

Journal:

Journal of Virology

Year:

2015

Language:

english

File:

PDF, 414 KB

english, 2015

46

Diagnosing Leukemia Through Entropy

Vogel, Robert, Ziegler, Carly, Altan-Bonnet, Grégoire

Journal:

Physics (American Physical Society)

Year:

2014

Language:

english

File:

PDF, 1.70 MB

english, 2014

47

Dichotomy of cellular inhibition by small-molecule inhibitors revealed by single-cell analysis

Vogel, Robert M., Erez, Amir, Altan-Bonnet, Grégoire

Journal:

Nature Communications

Year:

2016

Language:

english

File:

PDF, 1.36 MB

english, 2016

48

Lipid Tales of Viral Replication and Transmission

Altan-Bonnet, Nihal

Journal:

Trends in Cell Biology

Year:

2016

Language:

english

File:

PDF, 2.61 MB

english, 2016

49

Lymphocytic division clocked up by Myc

Erez, Amir, Altan-Bonnet, Grégoire

Journal:

Immunology & Cell Biology

Year:

2017

Language:

english

File:

PDF, 174 KB

english, 2017

50

Single-cell quantification of IL-2 response by effector and regulatory T cells reveals critical plasticity in immune response

Feinerman, Ofer, Jentsch, Garrit, Tkach, Karen E, Coward, Jesse W, Hathorn, Matthew M, Sneddon, Michael W, Emonet, Thierry, Smith, Kendall A, Altan-Bonnet, Grégoire

Journal:

Molecular Systems Biology

Year:

2010

Language:

english

File:

PDF, 3.53 MB

english, 2010